Change Log¶
4.0.0 (unreleased)¶
Planned:
Remove deprecated commands in
desiutil.setup
.Remove deprecated module
desiutil.census
.Remove deprecated top-level
setup.py
.
3.4.2 (2023-11-29)¶
Fully support adding units and comments to FITS table columns (PR #201).
Created
desiutil.names
and added a function to it that takes an RA and DEC and produces a DESINAME that can be used to refer to a DESI object at that sky location (PR #203).
3.4.1 (2023-09-25)¶
Added functions to
desiutil.depend
to support removing dependencies from headers (PR #202).
3.4.0 (2023-09-14)¶
3.3.1 (2023-06-13)¶
3.3.0 (2023-05-04)¶
Migrate
python setup.py
commands to stand-alone scripts, maintaining some compatibility until version 4.0 (PR #190).
3.2.6 (2022-08-26)¶
desiInstall uses desihub location of simqso fork (commit e963344).
Allow desiInstall to remove permission-locked directories; suppress certain pip warnings (PR #185).
Allow desiInstall to compile code in certain branch installs (PR #188).
Add gpu_specter to known packages (PR #189).
3.2.5 (2022-01-20)¶
Update
desiutil.depend.add_dependencies()
to include key environment variables likeDESI_ROOT
(PR #183).
3.2.4 (2022-01-10)¶
Update
desiutil.plots.plot_grid_map()
to support matplotlib 3.5 (PR #181).
3.2.3 (2021-10-27)¶
Optionally compute the MW dust transmission in the WISE bands (PR #175).
Do not treat messages printed on STDERR as errors during desiInstall (PR #176).
Add
desiutil.brick.Bricks.brick_tan_wcs_size()
to compute required size of TAN-projection WCS tiles (PR #177).Improve some test coverage; RTD fixes (PR #178).
3.2.2 (2021-06-03)¶
3.2.1 (2021-05-13)¶
Changes in
desiutil.dust
: use Fitzpatrick reddening, adddust_transmission()
function, include GAIA bands (PR #171).desiutil.depend.possible_dependencies()
: add fiberassign, desimeter, and gpu_specter (direct commit).
3.2.0 (2021-03-29)¶
Use pip install . instead of python setup.py install (PR #168).
3.1.2 (2021-02-15)¶
Fixes for Numpy 1.20 (PR #162).
desiInstall auto derive build type “py” or “make” or “src” but don’t combine them (PR #163).
desiInstall only fallback to NERSC default installdir if
--root
isn’t specified (PR #163).Add
desiutil.depend.mergedep()
to merge DEPNAMnn/DEPVERnn dependencies between different headers (PR #164)
3.1.1 (2020-12-23)¶
3.1.0 (2020-12-11)¶
3.0.3 (2020-08-04)¶
Improve installation robustness when parsing
DESICONDA
environment variable; fix py3.8 SyntaxWarnings about “is not” usage (PR #150).
3.0.2 (2020-07-31)¶
3.0.1 (2020-06-12)¶
Start migrating to use pytest to run tests instead of python setup.py test (PR #145).
Update package list in
desiutil.install
; enable parallel make (PR #143).Protect against running fix_permissions.sh in
HOME
(PR #142).
3.0.0 (2020-04-15)¶
Note: minor desiutil.plots
API and usage changes due to PR #141
so moving to major version 3.0.0, even though the majority of desiutil
remains compatible with 2.x.x
2.0.3 (2020-04-10)¶
Add IERS functions originally in desisurvey (PR #139).
2.0.2 (2020-01-25)¶
Update NERSC paths for CFS (PR #137).
2.0.1 (2019-09-24)¶
Updated to latest ReadTheDocs configuration; standardized some docstrings for better appearance (PR #136).
No code changes.
2.0.0 (2019-09-15)¶
This version does not support Python 2.
No significant API changes, however.
1.9.16 (2019-08-09)¶
1.9.15 (2018-12-14)¶
Add
desiutil.dust.ext_odonnell()
anddesiutil.dust.ext_ccm()
originally from desispec (PR #128).Update permissions set by fix_permissions.sh (PR #126).
Set read-only permissions on all Module files, and unlock them as needed (PR #125).
Draw ecliptic in all-sky plots (PR #124).
1.9.14 (2018-10-05)¶
Restrict write access on software installed with desiInstall (PR #122).
1.9.13 (2018-09-06)¶
Add
/maps
to the default dust directory (PR #119).
1.9.12 (2018-09-05)¶
Port the dust map code from desitarget to desiutil (PR #116).
1.9.11 (2018-05-10)¶
Installing extra data happens after the main install, to prevent collisions in creating the install directory (Issue #102, PR #109).
fix_permissions.sh
ignores the group-write bit (Issue #108, PR #109).Remove support for a desiInstall configuration file. All options are specified on the command-line (Issue #103, PR #109).
Update sklearn module to support updates to
sklearn.mixture.GaussianMixture
(PR #111).Added scatter option to
desiutil.plots.plot_slices()
; avoid slow PNG generation for large data samples (PR #112).
1.9.10 (2018-03-29)¶
1.9.9 (2017-12-20)¶
Enhance
desiutil.log
with a context manager (PR #92), and change the way the log level is set.Avoid logging interference with
desiutil.log.get_logger()
is called with different log levels (PR #93).Use
unittest.mock
to increase test coverage.
1.9.8 (2017-11-09)¶
Adds redrock, surveysim, desisurvey, and healpy to dependency version checks.
Adds redrock and surveysim to known products for installation.
Fix team name in license file.
Support new
/global/common/software
filesystem at NERSC.Support
coriknl
versions of desiconda.
1.9.7 (2017-09-29)¶
Fixed some test failures that occurred in the NERSC environment and/or in an installed package, as opposed to a git checkout (PR #80).
Fixed bug in
desiutil.brick.Bricks.brick_radec()
handling scalar inputs (PR #81).Fixed bugs that could cause bricks to be slightly too big, and that incorrectly special-cased the north pole with brick sizes that don’t evenly divide 180 degrees (PR #84).
Adds
return_grid_data
option todesiutil.plots.plot_sky_binned()
(PR #85).Added tests of
desiutil.sklearn
(PR #86).
1.9.6 (2017-07-12)¶
1.9.5 (2017-06-15)¶
Improved correctness and functionality of
desiutil.brick
(PR #74).
1.9.4 (2017-06-01)¶
Moved
desispec.brick
todesiutil.brick
(PR #70).Get .travis.yml file and other components ready for Python 3.6.
Increase test coverage in a few areas.
Fix desiInstall on cori.
Add
desiutil.census
to calculate DESI disk space use.
1.9.3 (2017-03-01)¶
Added new
desiutil.sklearn
module anddistutils.sklearn.GaussianMixtureModel
class to save and sample from a Gaussian mixture model.Added new functions for creating all-sky maps (PR #52) with an accompanying tutorial notebook in doc/nb/.
Add option to fix_permissions.sh to remove group-writeability for “official” data. Also, make sure that files and directories are group-readable.
Moved logging infrastructure from desispec (PR #56).
1.9.2 (2016-11-18)¶
Enables desiInstall of desihub packages even if they aren’t in the
desiutil.install.known_products
list yet.Include
desiutil.plots
in documentation.
1.9.1 (2016-10-17)¶
Allow top-level
/python
directories to be detected (not just/py
) to support redmonster.
1.9.0 (2016-10-12)¶
Shorten Python version printed in dependency headers.
desiutil.test.test_plots
was not cleaning up after itself.Support new DESI+Anaconda software stack infrastructure (PR #43).
Fixes
names()
when mask is anumpy.uint64
(desihub/desitarget#79).names()
is much faster.Fixed problem opening tar files in Python 3.
1.8.0 (2016-09-10)¶
Added
encode_table()
anddecode_table()
for converting string columns in tables between unicode and bytes (PR #41).Set apache permissions by number instead of by name.
1.7.0 (2016-08-18)¶
Added
combine_dicts()
function.Added
desiutil.plots
module includingplot_slices()
.
1.6.0 (2016-07-01)¶
Fixed some import statements so documentation will build on readthedocs.
add_dependencies()
to add DEPNAM/DEPVER for common DESI dependencies
1.5.0 (2016-06-09)¶
Fixed bug affecting people with the C version of Modules installed on laptops.
Added
desiutil.depend
tools for manipulating DEPNAMnn and DEPVERnn keywords in FITS headers.
1.4.1 (2016-06-07)¶
Don’t consider warning messages about astropy_helpers to be errors.
Update desiInstall documentation, adding information about environment variables.
Use
distutils.command.sdist.sdist
to ensure thatMANIFEST.in
is respected.Add some test coverage in
desiutil.setup
.Cleaned up documentation of
desiutil.io
and several other modules.Modified conversion of keys to string in
desituil.io.yamlify
Log IP address in Travis Tests.
1.4.0 (2016-04-28)¶
Fix module processing problem for non-DESI Python packages.
Allow NERSC Modules root directory to be overridden in a configuration file.
desiutil.stats
module was previously snuck in, but never documented.Minor fixes for desiInstall bootstrap mode.
PR #30: Enable use of weights in
iter_fit()
.Add a method for connverting Python objects to yaml-ready format. Includes
unicode
tostr
conversion.
1.3.6 (2016-03-25)¶
Include
funcfits
in the documentation; addedmk_fit_dict()
.Improve coverage of
funcfits
.Try to use a nicer Sphinx theme for documentation.
1.3.5 (2016-03-15)¶
Ignore some additional MANIFEST.in warnings.
Allow known_products and cross-install configuration to be overridden using an optional configuration file.
Allow products to specify a method to download additional data not bundled with the code.
1.3.4 (2016-02-22)¶
Support GitHub tags that start with ‘v’.
Add support for speclite.
1.3.3 (2016-02-03)¶
Added
stats
module to compute percentiles on distributions.
1.3.2 (2016-01-25)¶
Recent versions of setuptools do not include
setuptools.compat
. A simple workaround was added to fix that.
1.3.1 (2016-01-12)¶
Update MANIFEST.in file.
Ignore additional warnings produced by MANIFEST.in.
Always run
fix_permissions.sh
after install.Remove references to defunct hopper system.
1.3.0 (2015-12-09)¶
Updated docstrings for bitmasks.
Added
funcfits
module.
1.2.0 (2015-11-24)¶
Added bitmask processing code,
desiutil.bitmask
.Fixed a minor variable name bug.
Ignore warnings produced by processing MANIFEST.in.
Fixed return value in cross_install.
Fixed a missing run stage.
1.1.1 (2015-11-18)¶
Update the list of NERSC hosts, including cori.
Code is now PEP 8 compliant.
1.1.0 (2015-11-06)¶
Don’t print scary warning about
DESI_PRODUCT_ROOT
not being set if running at NERSC.Support running
python setup.py version
in svn products.Move Modules support code into separate sub-package.
Simplify Travis build system.
Remove some obsolete files.
Simplify package structure.
1.0.1 (2015-11-03)¶
Fix issue where the Python tarfile package was failing to autodetect gzipped files.
1.0.0 (2015-10-29)¶
pip install support.
Remove unnecessary Sphinx extensions.
Create setup subpackage for functions that go in setup.py files.
fix_permissions.sh won’t clobber executable bits.
0.6.0 (2015-10-13)¶
Note: This tag should not be used or installed. It is an intermediate tag intended to fix a subtle issue with how svn tags are translated into git tags.
Fixed a problem with log handling.
Use
module switch
instead ofmodule load
when a module is already loaded.Add changes.rst file.
Add LICENSE.rst file.
Migration to GitHub - Change case of desiutil. - Add git support functions.
0.5.5 (2015-01-16)¶
Fix a corner case when desiInstall tries to install desiUtil.
Fix an svn version string parsing error.
0.5.4 (2015-01-16)¶
Fix a minor syntax error.
0.5.3 (2015-01-16)¶
Fix a minor syntax error.
0.5.2 (2015-01-16)¶
Update desiInstall documentation.
Changes to doc compilation.
0.5.1 (2015-01-14)¶
Update desiInstall documentation.
Handle
-hpcp
module names.Move build type detection to separate function.
Move documentation generation to separate function.
Add cross-install support.
0.5.0 (2015-01-14)¶
Adding support for GitHub installs.
0.4.2 (2015-01-12)¶
Fix a minor syntax error.
0.4.1 (2015-01-12)¶
Fix a minor syntax error.
0.4.0 (2015-01-12)¶
Major refactor of install, support ‘plain’ products.
Use
svn --non-interactive
where possible.
0.3.9 (2014-09-12)¶
Change the way tags are sorted.
Tweak documentation compilation.
0.3.8 (2014-06-24)¶
Change severity of certain log messages.
0.3.7 (2014-06-24)¶
Minor fix to logging.
0.3.6 (2014-06-24)¶
Don’t auto-generate the desiInstall script.
0.3.5 (2014-06-24)¶
Use ez_setup.py.
0.3.4 (2014-06-23)¶
Reconfigure how the desiInstall script is created.
0.3.3 (2014-06-23)¶
Tweak module file detection.
0.3.2 (2014-06-23)¶
Fix chmod error.
0.3.1 (2014-06-23)¶
Change
version()
to__version__
.
0.3.0 (2014-06-10)¶
Change how version strings are set.
Auto-detect a variety of build types.
0.2.5 (2014-05-26)¶
Fix how the Modules Python init file is detected.
0.2.4 (2014-05-06)¶
Fix directory creation for trunk/branch installs.
0.2.3 (2014-05-02)¶
Change how dependencies are handled in the module file.
Move some dependency processing to separate function.
General restructuring.
0.2.2 (2014-05-01)¶
Copy extra files in the etc directory.
Remove some data files from setup.py.
0.2.1 (2014-05-01)¶
Tweak how versions are reported.
0.2.0 (2014-05-01)¶
Tweak documentation.
Add ACL detection to fix_permission script.
0.1 (2014-01-09)¶
First tag.